ED

Model Information
Home Page	http://moorcroftlab.oeb.harvard.edu/
Source Code	https://github.com/EDmodel/ED2
License
Authors	Paul Moorcroft, ...
PEcAn Integration	Michael Dietze, Rob Kooper

Introduction

Introduction about ED model

PEcAn configuration file additions

Should list the model specific additions to the PEcAn file here

Model specific input files

List of inputs required by model, such as met, etc.

Model configuration files

ED2 is configured using 2 files which are placed in the run folder.

ED2IN : template for this file is located at models/ed/inst/ED2IN.\. The values in this template that need to be modified are described below and are surrounded with @ symbols.
config.xml : this file is generated by PEcAn. Some values are stored in the pecan.xml in \\\ section as well as in \ section.

An example of the template can be found in ED2IN.r82

The ED2IN template can contain the following variables. These will be replaced with actual values when the model configuration is written.

@ENSNAME@ : run id of the simulation, used in template for NL%EXPNME
@START_MONTH@ : start of simulation UTC time, from \\, used in template for NL%IMONTHA
@START_DAY@ : start of simulation UTC time, from \\, used in template for NL%IDATEA
@START_YEAR@ : start of simulation UTC time, from \\, used in template for NL%IYEARA
@END_MONTH@ : end of simulation UTC time, from \\, used in template for NL%IMONTHZ
@END_DAY@ : end of simulation UTC time, from \\, used in template for NL%IDATEZ
@END_YEAR@ : end of simulation UTC time, from \\, used in template for NL%IYEARZ
@SITE_LAT@ : site latitude location, from \\\, used in template for NL%POI_LAT
@SITE_LON@ : site longitude location, from \\\, used in template for NL%POI_LON
@SITE_MET@ : met header location, from \\\, used in template for NL%ED_MET_DRIVER_DB
@MET_START@ : first year of met data, from \\\, used in template for NL%METCYC1
@MET_END@ : last year of met data, from \\\, used in template for NL%METCYCF
@PHENOL_SCHEME@ : phenology scheme, if this variabe is 1 the following 3 fields will be used, otherwise they will be set to empty strings, from \\, used in template for NL%IPHEN_SCHEME
@PHENOL_START@ : first year for phenology, from \\, used in template for NL%IPHENYS1 and NL%IPHENYF1
@PHENOL_END@ : last year for phenology, from \\, used in template for NL%IPHENYSF and NL%IPHENYFF
@PHENOL@ : path and prefix of the prescribed phenology data, from * \, used in template for NL%PHENPATH
@SITE_PSSCSS@ : path and prefix of the previous ecosystem state, from \\, used in template for NL%SFILIN
@ED_VEG@ : path and prefix of the vegetation database, used only to determine the land/water mask, from \\, used in template for NL%VEG_DATABASE
@ED_SOIL@ : path and prefix of the soil database, used to determine the soil type, from \\, used in template for NL%SOIL_DATABASE
@ED_INPUTS@ : input directory with dataset to initialise chilling degrees and growing degree days, which is used to drive the cold-deciduous phenology, from \\, used in template for NL%THSUMS_DATABASE
@FFILOUT@ : path and prefix for analysis files, generated from \\\/run.id/analysis, used in template for NL%FFILOUT
@SFILOUT@ : path and prefix for history files, generated from \\\/run.id/history, used in template for NL%SFILOUT
@CONFIGFILE@ : XML file containing additional parameter settings, this is always "config.xml", used in template for NL%IEDCNFGF
@OUTDIR@ : location where output files are written (without the runid), from \\\, should not be used.
@SCRATCH@ : local scratch space for outputs, generated /scratch/\/run$scratch, should not be used right now since it only works on ebi-cluster

Installation notes

This section contains notes on how to compile the model. The notes for the VM might work on other machines or configurations as well.

VM

BU geo

TACC lonestar

module load hdf5
curl -o ED.r82.tgz http://isda.ncsa.illinois.edu/~kooper/EBI/ED.r82.tgz
tar zxf ED.r82.tgz
rm ED.r82.tgz
cd ED.r82/ED/build/bin
curl -o include.mk.lonestar http://isda.ncsa.illinois.edu/~kooper/EBI/include.mk.lonestar
make OPT=lonestar

TACC stampede

module load hdf5
curl -o ED.r82.tgz http://isda.ncsa.illinois.edu/~kooper/EBI/ED.r82.tgz
tar zxf ED.r82.tgz
rm ED.r82.tgz
cd ED.r82/ED/build/bin
curl -o include.mk.stampede http://isda.ncsa.illinois.edu/~kooper/EBI/include.mk.stampede
make OPT=stampede

ED

ED